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The series lasted for three seasons (10 episodes each), with each episode released month-by-month. As a Flash-based show, the animation differs significantly from most DCAU shows. In addition, the writing and storytelling often place considerably less emphasis on realism, especially compared to its cousins Batman: The Animated Series and The New Batman Adventures, often favoring a more "cartoonish" approach.

While the first two seasons featured primarily comedic, stand-alone episodes, the third season attempted to make the show more serious. These episodes linked directly to Batman & Mr. Freeze: SubZero. Dropping the magician Zatanna from its lineup and adding a host of new characters to the cast, including Detective Renee Montoya, each episode from this series tied into the next, forming a collective thirty-minute whodunit.